[New Conversation - this should really be in a Phylogenetics Community category].
In production mode all trees will be selected automatically. Before that we should estimate the error-rates in 2-3 sample chunks of Trees (at present 250 per chunk).
ami-phylo is run we can encounter various error types. Each error type should have a unique identifier. (later we can move the error types into
These error types should be listed on Github and edited for new ones or revision.
PHYLO_ERR_BAD_INPUT the Input does not exist or is not an image
PHYLO_ERR_NO_COMPLETE the analysis process fails to terminate
PIXEL_ERR_TREE_CYCLE the tree contains a cycle
SPECIES_WARN_LOOKUP_FAIL the species cannot be looked up in the online resource
and so on. Note that the first field is the plugin type, the second is the severity (ERR, WARN, INFO, DEBUG, TRACE) and the last are semi-readable messages.
These errors should be used as headings in recall/precision tables.