We are carrying out all discussion of
ami-phylogeny software , on
The primary resources are:
The code itself is under
which contains the standard Java / Maven structure:
src/main/java all source code.
src/main/resources configuration files (e.g. regex defs, and
args.xml which configure the commandline)
src/test/java test files used to develop the code and later to provide regression tests (and also a useful number of examples).
src/test/resources data for testing. In some cases the expected output is also present, giving a useful set of examples
pom.xml the Maven build file.
target/... the temporary output location. This is NOT archived and is cleaned on major rebuilds.