New per file log files
Peter has devised a new per input file log for the amii-phylo analysis process. Here is an example of this log:
The second line specifies the date the log was made, in an ISO 8601 compliant format. The third line logs the relative output path - where the analysis files were output to on his machine.
Next come the warning and error message lines. Each
error is saved with an informative message explaining the warning or error e.g. "corrected to: Aminomonas paucivorans" -- the taxon label was looked-up and as a result of GenBank lookup was corrected to Aminomonas paucivorans.
This logging standard is new and may be subject to change in future but you get the idea of what we can monitor now, on an automatic basis.